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SHHS Dataset Fails Download (bad URI)

2 posts
bio
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fwajid +0 points · 2 months ago

Upon downloading the dataset, I receive a bad URI error, shown below:

  create shhs/forms/
  create shhs/forms/shhs1/

/home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/3.0.0/uri/rfc3986_parser.rb:67:in `split': bad URI(is not URI?): "https://sleepdata.org/datasets/shhs/files/a/11463-PyYzG-3vzWir7y16cRmx/m/nsrr-gem-v6-0-0/forms/shhs1/SHHS 1 Adverse Events Form.pdf" (URI::InvalidURIError) from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/3.0.0/uri/rfc3986_parser.rb:72:in parse' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/3.0.0/uri/common.rb:171:inparse' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/helpers/download_request.rb:20:in initialize' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/file.rb:61:innew' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/file.rb:61:in force_download' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/file.rb:39:indownload' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/dataset.rb:104:in block in download_helper' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/dataset.rb:102:ineach' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/dataset.rb:102:in download_helper' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/dataset.rb:117:inblock in download_helper' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/dataset.rb:116:in each' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/dataset.rb:116:indownload_helper' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/dataset.rb:117:in block in download_helper' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/dataset.rb:116:ineach' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/dataset.rb:116:in download_helper' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/models/dataset.rb:80:indownload' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/commands/download.rb:38:in run' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr/commands/download.rb:14:inrun' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr.rb:26:in download' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/lib/nsrr.rb:16:inlaunch' from /home/labman/.rvm/rubies/ruby-3.0.0/lib/ruby/gems/3.0.0/gems/nsrr-6.0.0/bin/nsrr:6:in &lt;top (required)>' from /home/labman/.rvm/gems/ruby-3.0.0/bin/nsrr:23:inload' from /home/labman/.rvm/gems/ruby-3.0.0/bin/nsrr:23:in `<main>'

Here are my Ruby and Gems versions:

$> ~/.rvm/gems/ruby-3.0.0/bin/nsrr -v

Nsrr 6.0.0

$> ruby -v

ruby 2.5.5p157 (2019-03-15 revision 67260) [x86_64-linux]

It seems the problem is the spaces in the filename being retrieved : https://sleepdata.org/datasets/shhs/files/a/11463-PyYzG-3vzWir7y16cRmx/m/nsrr-gem-v6-0-0/forms/shhs1/ SHHS 1 Adverse Events Form.pdf

The resource exists (can just paste the link into my browser, which will replace spaces with %20) however I am not sure how to do this directly in the download process, or if there is a replacement resource available.

RESOLUTION: I manually downloaded the files in forms/shhs1 and shhs2 and placed them in the appropriate directories so the downloader can continue, but this could be a problem for future downloaders.

The files are accessible here: https://sleepdata.org/datasets/shhs/files/forms/shhs1 and https://sleepdata.org/datasets/shhs/files/forms/shhs2

270 posts
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mrueschman +0 points · 2 months ago

Hey - thanks. I have no problems downloading the forms (Ruby 2.6, NSRR gem 5.0.0) --

Indeed, a simple resolution is downloading the files manually. It appears as if you have downloaded Ruby 3.0.0 but yet your system is still using Ruby 2.5.5, which I believe could cause issues.

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tianlei730 +0 points · 2 months ago

It's killing to download it manually. Such a large amount of data. You have to download it automatically at night.

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